How to structure you JS application

According to my reasearch which I was doing in past few months I got to some conclusions on how to structure your application for best code reusability.

Several patterns come to my mind, Module, Namespace, immediate functions, returning objects, using subobjects, using capitalized letters for functions/variables as "Constants", function scope and making accessor methods, JS constructors, using Yuidoc and Jasmine for better code quality.

Download the code from here: https://github.com/bluePlayer/practices/tree/master/AppStructure

Here is roughly what I am thinking about:

var externalJSLibrary = {},
    jquery = {},
    extJS = {},
    expressJS;

window.APP = window.APP || (function (wdo, lib1, lib2, lib3) {'use strict';
    var version = "1.0.0",
        config = {},
        parent = null,
        jqueryObj = lib1,
        extJSObj = lib2,
        expressJsObj = lib3,
        windowDocumentObject = wdo,
        MY_APP_NAME = "MyJSApplication",
        MY_EXCEPTION_MESSAGE = "My exception message",
        MY_APP_CONSTANT = "some message";

    return {
        Exceptions: {
            MyFirstException: function () {
                return {
                    message: MY_EXCEPTION_MESSAGE,
                    name: "MyFirstException"
                };
            }
        },

        Constants: {
            MY_APP_NAME: function () {
                return MY_APP_NAME;
            },
            MY_APP_CONSTANT: function () {
                return MY_APP_CONSTANT;
            }
        },

        Events: {
             keyDownEvent: function (event) {
                 // do some stuff when some key is pressed down on 'keydown' event.
             },

             keyUpEvent: function (event) {
                 // do some stuff when some key is released on 'keyup' event
             },

             keyPressEvent: function (event) {
                 // do some stuff when 'keypress' event was detected
             }
        },

        initApp: function (someObject, config) {
            var i;

            for (i in someObject) {
                if (someObject[i] !== null && typeof someObject[i] === 'object') {
                    if (someObject[i].hasOwnProperty('init')) {
                        someObject[i].init(config);
                    }
                    parent.initApp(someObject[i], config);
                }
            }
        },

        namespace: function (nsString, newObjectDefinition) {
            var parts = nsString.split('.'),
                helperObject = {},
                that = this,
                i = 0,
                field = {};

            if (parts[0] === that.Constants.MY_APP_NAME()) {
                parts = parts.slice(1);
            }

            for (i = 0; i < parts.length; i += 1) {
                if (that[parts[i]] === undefined) {
                    for (field in newObjectDefinition) {
                        if (newObjectDefinition.hasOwnProperty(field)) {
                            helperObject[field] = newObjectDefinition[field];
                        }
                    }
                    that[parts[i]] = helperObject;
                }
                that = that[parts[i]];
            }
            return that;
        },

        customFunction: function (a, b) {
            if (b < 0) {
                throw new parent.Exceptions.MyFirstException();
            } else {
                return 0;// do some stuff with a and b
            }
        },

        doSomeStuffWithJquery: function (someUrl) {
            jqueryObj.ajax({
                url: someUrl,
                xhrFields: {
                    withCredentials: true
                }
            });
        },

        doSomeStuffWithExtJS: function () {
            extJSObj.drawGraph();
        },

        doSomeStuffWithExpressJS: function () {
            expressJsObj.connectWithNodeJS();
        },

        init: function (configObject) {
            config = configObject;
            parent = this;
            parent.initApp(parent, config);
        }
    };
    }(window.document, jquery, extJS, expressJS));

window.APP.namespace('MySubObject', (function (lib) {'use strict';
    var config = {},
        parent = null,
        someLibrary = lib,
        MY_CONSTANT = "my constant",
        MY_EXCEPTION = "my exception";

    return {

        Exceptions: {
            MyNewException: function () {
                return {
                    message: MY_EXCEPTION,
                    name: "MyNewException"
                };
            }
        },

        Constants: {
            MY_CONSTANT: function () {
                return MY_CONSTANT;
            }
        },

        name: "MySubObject",

        myCustomFunction: function () {
            // do some stuff
        },

        init: function (configObj) {
            config = configObj;
            parent = this;
        }
    };
    }(externalJSLibrary)));

window.document.addEventListener("DOMContentLoaded", function (event) {'use strict';

    var myApp = window.APP;

    myApp.init({
        "event": event,
        otherConfig: {}
    });

    window.document.addEventListener('keydown', myApp.Events.keyDownEvent);
    window.document.addEventListener('keyup', myApp.Events.keyUpEvent);
    window.document.addEventListener('keypress', myApp.Events.keyPressEvent);

    });